Index

_

__add_single_image_series() (VideoFilesInjector static method) __build_corrupted_data_manager() (NWBFileBuilder method) __build_fl_shanks() (FlShankManager method) __build_fl_shanks_electrodes() (FlShanksElectrodeManager method) __build_mda_invalid_times() (FlMdaInvalidTimeManager static method) __build_mda_valid_times() (FlMdaValidTimeManager static method) __build_pos_invalid_times() (FlPosInvalidTimeManager static method) __build_pos_valid_times() (FlPosValidTimeManager static method) __build_single_camera_device() (FlCameraDeviceManager static method) __build_single_data_acq_device() (FlDataAcqDeviceManager static method) __build_single_fl_shank() (FlShankManager method) __build_single_fl_shanks_electrodes() (FlShanksElectrodeManager method) __build_timeseries() (AnalogCreator static method) (CameraSampleFrameCountsBuilder class method) (DioBuilder class method) __calculate_file_lenghts_in_datasets() (TimestampManager method) __calculate_pos_period() (FlPosInvalidTimeManager static method) (FlPosValidTimeManager static method) __check_if_path_exists() (DataScanner method) __check_single_epoch() (PreprocessingValidator method), [1], [2] __compare_global_configuration_with_default() (FlHeaderDeviceManager method) __compare_with_xml_schema() (ReconfigHeaderChecker class method) __convert_iterable_to_string() (FlAssociatedFilesManager static method) __convert_keys() (DioExtractor static method) __create_behavioral_events() (AnalogCreator static method) (DioBuilder class method) __data_exist() (FlMdaExtractor static method) __extract_data() (FlMdaExtractor method) (FlPositionExtractor method) __extract_data_for_single_dataset() (FlMdaExtractor method) __extract_datasets() (DataScanner static method) (NWBFileBuilder method) __extract_experiments() (DataScanner method) __extract_single() (CameraSampleFrameCountsExtractor method) __filter_extension_list_with_electrodes_valid_map() (FlElectrodeExtensionManager static method) __filter_files() (DioFiles class method) __get_all_hwsync_files() (CameraSampleFrameCountsExtractor method) __get_cameras_ids() (FlPositionManager static method) __get_continuous_time_data_from_single_file() (SampleCountTimestampCorespondenceExtractor method) __get_continuous_time_files() (AnalogOriginator method) (DioOriginator method) __get_data_from_current_dataset() (FlMdaExtractor static method) __get_data_from_file() (SingleThreadDataIterator method) __get_dict() (AnalogFiles class method) (DioFiles class method) __get_dio_time_series() (DioExtractor static method) __get_electrode_group() (FlElectrodeManager static method) __get_electrode_groups_valid_map() (CorruptedDataManager method) __get_electrodes_valid_map() (CorruptedDataManager static method) __get_epochs_tags() (FlEpochsManager static method) __get_header_path() (RawToNWBBuilder method) __get_mda_invalid_times() (FlMdaInvalidTimeManager method) __get_mda_timestamps() (FlMdaInvalidTimeManager static method) (FlMdaValidTimeManager static method) __get_mda_valid_times() (FlMdaInvalidTimeManager method) (FlMdaValidTimeManager method) __get_metadata() (MetadataManager method) __get_meters_per_pixels() (FlPositionManager static method) __get_missing_metadata() (MetadataValidator method) __get_missing_preprocessing_data() (PreprocessingValidator method) __get_pos_invalid_times() (FlPosInvalidTimeManager method) __get_pos_timestamps() (FlPosInvalidTimeManager static method) (FlPosValidTimeManager static method)

__get_pos_valid_times() (FlPosInvalidTimeManager method) (FlPosValidTimeManager method) __get_probe_by_type() (FlElectrodeGroupManager static method) (FlNwbElectrodeGroupManager static method) __get_probes() (MetadataManager method) __get_probes_valid_map() (CorruptedDataManager static method) __get_region() (TableRegionBuilder method) __get_selection() (MultiThreadTimestampIterator method) (SingleThreadTimestampIterator method) __get_single_fl_task() (TaskManager method) __get_timestamps() (FlAnalogManager class method) (SingleThreadTimestampIterator method) __inject_device() (DeviceInjector static method) __inject_electrode_group() (ElectrodeGroupInjector static method) __is_ntrode_valid() (CorruptedDataManager static method) __is_rec_config_valid() (RawToNWBBuilder method) __iter__() (DataIterator method) (SingleThreadDataIterator method) (TimestampIterator method) __join_extensions_to_electrodes() (ElectrodeExtensionInjector static method) __merge_analog_sensors() (FlAnalogManager class method) __merge_data_from_multiple_files() (CameraSampleFrameCountsExtractor static method) (SampleCountTimestampCorespondenceExtractor method) __merge_dio_data() (DioManager class method) __merge_epochs() (FlAnalogManager static method) __merge_row_description() (FlAnalogManager static method) __next__() (MultiThreadDataIterator method) (MultiThreadTimestampIterator method) (SingleThreadDataIterator method) (SingleThreadTimestampIterator method) __preprocess_data() (RawToNWBBuilder method) __read_continuous_time() (SessionTimeExtractor static method) __read_contunious_time_file() (FlEpochsExtractor method) __str__() (CorruptedDataException method) (InvalidException method) (InvalidHeaderException method) (InvalidInputException method) (InvalidMetadataException method) (InvalidPathException method) (InvalidXMLException method) (MetadataManager method) (MissingDataException method) __validate() (MetadataManager static method) __validate_data() (CorruptedDataManager static method) __validate_extension_length() (FlElectrodeExtensionManager static method) __validate_parameters() (FlElectrodeManager static method) __validate_xml_header() (ReconfigHeaderChecker class method) _build_single_probe() (FlProbeManager method) _DEFAULT_ANALOG_EXPORT_ARGS (in module rec_to_nwb.processing.builder.raw_to_nwb_builder) _DEFAULT_DIO_EXPORT_ARGS (in module rec_to_nwb.processing.builder.raw_to_nwb_builder) _DEFAULT_LFP_EXPORT_ARGS (in module rec_to_nwb.processing.builder.raw_to_nwb_builder) _DEFAULT_MDA_EXPORT_ARGS (in module rec_to_nwb.processing.builder.raw_to_nwb_builder) _DEFAULT_SPIKE_EXPORT_ARGS (in module rec_to_nwb.processing.builder.raw_to_nwb_builder) _DEFAULT_TIME_EXPORT_ARGS (in module rec_to_nwb.processing.builder.raw_to_nwb_builder) _DEFAULT_TRODES_REC_EXPORT_ARGS (in module rec_to_nwb.processing.builder.raw_to_nwb_builder) _get_data_shape() (DataManager method) (TimestampManager method) _get_file_length() (DataManager method) _get_number_of_datasets() (TimestampManager method) _get_selection() (DataIterator method) _get_timestamps() (MdaTimestampDataManager method) (PosTimestampManager method) (TimestampManager method)

A

AbstractFileDownloader (class in processing.tools.abstract_file_downloader) (class in rec_to_nwb.processing.tools.abstract_file_downloader) add_data_to_dataset() (Dataset method), [1] AnalogCreator (class in rec_to_nwb.processing.nwb.components.analog.analog_creator) AnalogFiles (class in processing.nwb.components.analog.analog_files) (class in rec_to_nwb.processing.nwb.components.analog.analog_files) AnalogInjector (class in processing.nwb.components.analog.analog_injector) (class in rec_to_nwb.processing.nwb.components.analog.analog_injector) AnalogOriginator (class in rec_to_nwb.processing.builder.originators.analog_originator) append_to_nwb() (RawToNWBBuilder method) (RawToNWBBuilder static method)

Argument (class in processing.header.module.argument) (class in rec_to_nwb.processing.header.module.argument) AssociatedFilesCreator (class in rec_to_nwb.processing.nwb.components.associated_files.associated_files_creator) AssociatedFilesInjector (class in processing.nwb.components.associated_files.associated_files_injector) (class in rec_to_nwb.processing.nwb.components.associated_files.associated_files_injector) AssociatedFilesOriginator (class in rec_to_nwb.processing.builder.originators.associated_files_originator) AssociatedFilesValidationSummary (class in processing.validation.associated_files_validation_summary) (class in rec_to_nwb.processing.validation.associated_files_validation_summary) AssociatedFilesValidator (class in processing.validation.associated_files_validation) (class in rec_to_nwb.processing.validation.associated_files_validation) AuxDisplayConfiguration (class in processing.header.module.aux_display_configuration) (class in rec_to_nwb.processing.header.module.aux_display_configuration)

B

beartype() (in module processing.tools.beartype.beartype) (in module rec_to_nwb.processing.tools.beartype.beartype) build() (CameraSampleFrameCountsBuilder method) (DioBuilder method) (FlAnalogBuilder static method) (FlAssociatedFilesBuilder static method) (FlCameraDeviceBuilder static method) (FlDataAcqDeviceBuilder static method) (FlElectrodeExtensionBuilder static method) (FlElectrodeGroupBuilder static method) (FlElectrodesBuilder static method) (FlEpochsBuilder method), [1] (FlHeaderDeviceBuilder static method) (FlMdaBuilder method), [1] (FlMdaInvalidTimeBuilder static method) (FlMdaValidTimeBuilder static method) (FlNwbElectrodeGroupBuilder static method) (FlPosInvalidTimeBuilder static method) (FlPositionBuilder static method), [1] (FlPosValidTimeBuilder static method) (FlProbeBuilder static method), [1] (FlShankBuilder static method), [1] (FlShanksElectrodeBuilder static method), [1] (FlVideoFilesBuilder static method) (NWBFileBuilder method), [1] (SampleCountTimestampCorespondenceBuilder method) (TableRegionBuilder method), [1] (TaskBuilder static method), [1]

build_and_append_to_nwb() (NWBFileBuilder method), [1] build_nwb() (RawToNWBBuilder method), [1]

C

CameraDeviceOriginator (class in rec_to_nwb.processing.builder.originators.camera_device_originator) CameraSampleFrameCounts (class in processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts) (class in rec_to_nwb.processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts) CameraSampleFrameCountsBuilder (class in rec_to_nwb.processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts_builder) CameraSampleFrameCountsExtractor (class in rec_to_nwb.processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts_extractor) CameraSampleFrameCountsInjector (class in processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts_injector) (class in rec_to_nwb.processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts_injector) CameraSampleFrameCountsManager (class in rec_to_nwb.processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts_manager) CameraSampleFrameCountsOriginator (class in rec_to_nwb.processing.builder.originators.camera_sample_frame_counts_originator) Channel (class in processing.header.module.channel) (class in rec_to_nwb.processing.header.module.channel) cleanup() (RawToNWBBuilder method), [1] compare() (HeaderComparator method) Configuration (class in processing.header.module.configuration) (class in rec_to_nwb.processing.header.module.configuration) ContinuousTimeExtractor (class in rec_to_nwb.processing.time.continuous_time_extractor) convert_timestamps() (FlVideoFilesExtractor method) (TimestampConverter static method) copy() (VideoFilesCopyMaker method), [1] CorruptedDataException CorruptedDataManager (class in rec_to_nwb.processing.metadata.corrupted_data_manager) count_electrodes_in_ntrode() (in module processing.tools.count_electrodes_in_ntrode) (in module rec_to_nwb.processing.tools.count_electrodes_in_ntrode) count_electrodes_in_probe() (in module processing.tools.count_electrodes_in_probe) (in module rec_to_nwb.processing.tools.count_electrodes_in_probe) create() (AnalogCreator class method) (AssociatedFilesCreator class method) (ElectrodesCreator class method) (PositionCreator static method) (ShankCreator class method) (ShanksElectrodeCreator class method) (TaskCreator class method) (VideoFilesCreator static method)

create_all() (PositionCreator method) create_bad_channels() (FlElectrodeExtensionFactory class method), [1] create_camera_device() (DeviceFactory class method) create_channel_id() (FlElectrodeExtensionFactory class method), [1] create_data_acq_device() (DeviceFactory class method) create_device() (DeviceFactory class method) create_electrode_group() (ElectrodeGroupFactory class method) create_header_device() (DeviceFactory class method) create_hw_chan() (FlElectrodeExtensionFactory class method), [1] create_mda() (ElectricalSeriesCreator class method) create_ntrode_id() (FlElectrodeExtensionFactory class method), [1] create_nwb_electrode_group() (ElectrodeGroupFactory class method) create_probe() (DeviceFactory class method) create_probe_electrode() (FlElectrodeExtensionFactory class method), [1] create_probe_shank() (FlElectrodeExtensionFactory class method), [1] create_ref_elect_id() (FlElectrodeExtensionFactory class method), [1] create_rel() (FlElectrodeExtensionFactory class method), [1] create_summary() (AssociatedFilesValidator method), [1] (MetadataValidator method), [1] (NotEmptyValidator method), [1] (NTrodeValidator method) (PathValidator method), [1] (PreprocessingValidator method), [1] (TaskValidator method), [1] (Validator method), [1] (XmlFilesValidator method), [1]

D

DataAcqDeviceOriginator (class in rec_to_nwb.processing.builder.originators.data_acq_device_originator) DataIterator (class in rec_to_nwb.processing.nwb.components.iterator.data_iterator) DataManager (class in rec_to_nwb.processing.nwb.common.data_manager) DataScanner (class in rec_to_nwb.processing.tools.data_scanner) Dataset (class in processing.tools.dataset) (class in rec_to_nwb.processing.tools.dataset) Device (class in processing.header.module.device) (class in rec_to_nwb.processing.header.module.device) DeviceFactory (class in rec_to_nwb.processing.nwb.components.device.device_factory) DeviceInjector (class in rec_to_nwb.processing.nwb.components.device.device_injector) DioBuilder (class in rec_to_nwb.processing.nwb.components.dio.dio_builder) DioExtractor (class in rec_to_nwb.processing.nwb.components.dio.dio_extractor)

DioFiles (class in processing.nwb.components.dio.dio_files) (class in rec_to_nwb.processing.nwb.components.dio.dio_files) DioInjector (class in processing.nwb.components.dio.dio_injector) (class in rec_to_nwb.processing.nwb.components.dio.dio_injector) DioManager (class in rec_to_nwb.processing.nwb.components.dio.dio_manager) DioOriginator (class in rec_to_nwb.processing.builder.originators.dio_originator) DispChannel (class in processing.header.module.disp_channel) (class in rec_to_nwb.processing.header.module.disp_channel) download_file() (AbstractFileDownloader method), [1] (FileDownloader method), [1], [2], [3] dtype() (DataIterator property) (TimestampIterator property)

E

ElectricalSeriesCreator (class in rec_to_nwb.processing.nwb.components.mda.electrical_series_creator) ElectrodeExtensionInjector (class in rec_to_nwb.processing.nwb.components.electrodes.extension.electrode_extension_injector) ElectrodeGroupFactory (class in rec_to_nwb.processing.nwb.components.electrode_group.electrode_group_factory) ElectrodeGroupInjector (class in rec_to_nwb.processing.nwb.components.electrode_group.electrode_group_injector) ElectrodeGroupOriginator (class in rec_to_nwb.processing.builder.originators.electrode_group_originator) ElectrodesCreator (class in rec_to_nwb.processing.nwb.components.electrodes.electrode_creator) ElectrodesExtensionOriginator (class in rec_to_nwb.processing.builder.originators.electrodes_extension_originator) ElectrodesOriginator (class in rec_to_nwb.processing.builder.originators.electrodes_originator) EpochsInjector (class in processing.nwb.components.epochs.epochs_injector) (class in rec_to_nwb.processing.nwb.components.epochs.epochs_injector) EpochsOriginator (class in rec_to_nwb.processing.builder.originators.epochs_originator) EpochsTagExtractor (class in processing.nwb.components.epochs.epochs_tag_extractor) (class in rec_to_nwb.processing.nwb.components.epochs.epochs_tag_extractor)

extract() (CameraSampleFrameCountsExtractor method) (SampleCountTimestampCorespondenceExtractor method) extract_analog_for_single_dataset() (FlAnalogExtractor static method) extract_data_from_all_dates_folders() (DataScanner method) extract_data_from_date_folder() (DataScanner method) extract_data_from_dates_folders() (DataScanner method) extract_dio_for_single_dataset() (DioExtractor static method) extract_epochs() (FlEpochsExtractor method) extract_headers_from_rec_files() (HeaderFilesExtractor method) extract_metadata() (MetadataExtractor static method), [1] extract_probes_metadata() (FlProbesExtractor class method), [1] extract_video_files() (FlVideoFilesExtractor method) extract_xml_from_rec_file() (XMLExtractor method), [1]

F

FileDownloader (class in processing.tools.file_downloader) (class in rec_to_nwb.processing.tools.file_downloader) FileSorter (class in processing.tools.file_sorter) (class in rec_to_nwb.processing.tools.file_sorter) filter_probe_by_type() (in module processing.tools.filter_probe_by_type) (in module rec_to_nwb.processing.tools.filter_probe_by_type) find_rec_files() (RecFileFinder static method), [1] FlAnalog (class in processing.nwb.components.analog.fl_analog) (class in rec_to_nwb.processing.nwb.components.analog.fl_analog) FlAnalogBuilder (class in rec_to_nwb.processing.nwb.components.analog.fl_analog_builder) FlAnalogExtractor (class in rec_to_nwb.processing.nwb.components.analog.fl_analog_extractor) FlAnalogManager (class in rec_to_nwb.processing.nwb.components.analog.fl_analog_manager) FlAssociatedFile (class in rec_to_nwb.processing.nwb.components.associated_files.fl_associated_file) FlAssociatedFilesBuilder (class in rec_to_nwb.processing.nwb.components.associated_files.fl_associated_files_builder) FlAssociatedFilesManager (class in processing.nwb.components.associated_files.fl_associated_files_manager) (class in rec_to_nwb.processing.nwb.components.associated_files.fl_associated_files_manager) FlAssociatedFilesReader (class in processing.nwb.components.associated_files.fl_associated_files_reader) (class in rec_to_nwb.processing.nwb.components.associated_files.fl_associated_files_reader) FlCameraDevice (class in processing.nwb.components.device.camera.fl_camera_device) (class in rec_to_nwb.processing.nwb.components.device.camera.fl_camera_device) FlCameraDeviceBuilder (class in rec_to_nwb.processing.nwb.components.device.camera.fl_camera_device_builder) FlCameraDeviceManager (class in processing.nwb.components.device.camera.fl_camera_device_manager) (class in rec_to_nwb.processing.nwb.components.device.camera.fl_camera_device_manager) FlDataAcqDevice (class in processing.nwb.components.device.acq.fl_data_acq_device) (class in rec_to_nwb.processing.nwb.components.device.acq.fl_data_acq_device) FlDataAcqDeviceBuilder (class in rec_to_nwb.processing.nwb.components.device.acq.fl_data_acq_device_builder) FlDataAcqDeviceManager (class in processing.nwb.components.device.acq.fl_data_acq_device_manager) (class in rec_to_nwb.processing.nwb.components.device.acq.fl_data_acq_device_manager) FlDevice (class in processing.nwb.components.device.fl_device) (class in rec_to_nwb.processing.nwb.components.device.fl_device) FlElectrode (class in processing.nwb.components.electrodes.fl_electrodes) (class in rec_to_nwb.processing.nwb.components.electrodes.fl_electrodes) FlElectrodeExtension (class in processing.nwb.components.electrodes.extension.fl_electrode_extension) (class in rec_to_nwb.processing.nwb.components.electrodes.extension.fl_electrode_extension) FlElectrodeExtensionBuilder (class in rec_to_nwb.processing.nwb.components.electrodes.extension.fl_electrode_extension_builder) FlElectrodeExtensionFactory (class in processing.nwb.components.electrodes.extension.fl_electrode_extension_factory) (class in rec_to_nwb.processing.nwb.components.electrodes.extension.fl_electrode_extension_factory) FlElectrodeExtensionManager (class in rec_to_nwb.processing.nwb.components.electrodes.extension.fl_electrode_extension_manager) FlElectrodeGroup (class in processing.nwb.components.electrode_group.fl_electrode_group) (class in rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group) FlElectrodeGroupBuilder (class in rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group_builder) FlElectrodeGroupManager (class in rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group_manager) FlElectrodeManager (class in rec_to_nwb.processing.nwb.components.electrodes.fl_electrode_manager) FlElectrodesBuilder (class in rec_to_nwb.processing.nwb.components.electrodes.fl_electrode_builder) FlEpochs (class in processing.nwb.components.epochs.fl_epochs) (class in rec_to_nwb.processing.nwb.components.epochs.fl_epochs) FlEpochsBuilder (class in processing.nwb.components.epochs.fl_epochs_builder) (class in rec_to_nwb.processing.nwb.components.epochs.fl_epochs_builder) FlEpochsExtractor (class in rec_to_nwb.processing.nwb.components.epochs.fl_epochs_extractor) FlEpochsManager (class in rec_to_nwb.processing.nwb.components.epochs.fl_epochs_manager) FlHeaderDevice (class in processing.nwb.components.device.header.fl_header_device) (class in rec_to_nwb.processing.nwb.components.device.header.fl_header_device) FlHeaderDeviceBuilder (class in rec_to_nwb.processing.nwb.components.device.header.fl_header_device_builder) FlHeaderDeviceManager (class in processing.nwb.components.device.header.fl_header_device_manager) (class in rec_to_nwb.processing.nwb.components.device.header.fl_header_device_manager) FlMda (class in processing.nwb.components.mda.fl_mda) (class in rec_to_nwb.processing.nwb.components.mda.fl_mda)

FlMdaBuilder (class in processing.nwb.components.mda.fl_mda_builder) (class in rec_to_nwb.processing.nwb.components.mda.fl_mda_builder) FlMdaExtractor (class in rec_to_nwb.processing.nwb.components.mda.fl_mda_extractor) FlMdaInvalidTime (class in processing.nwb.components.mda.time.invalid.fl_mda_invalid_time) (class in rec_to_nwb.processing.nwb.components.mda.time.invalid.fl_mda_invalid_time) FlMdaInvalidTimeBuilder (class in rec_to_nwb.processing.nwb.components.mda.time.invalid.fl_mda_invalid_time_builder) FlMdaInvalidTimeManager (class in rec_to_nwb.processing.nwb.components.mda.time.invalid.fl_mda_invalid_time_manager) FlMdaManager (class in rec_to_nwb.processing.nwb.components.mda.fl_mda_manager) FlMdaValidTime (class in processing.nwb.components.mda.time.valid.fl_mda_valid_time) (class in rec_to_nwb.processing.nwb.components.mda.time.valid.fl_mda_valid_time) FlMdaValidTimeBuilder (class in rec_to_nwb.processing.nwb.components.mda.time.valid.fl_mda_valid_time_builder) FlMdaValidTimeManager (class in rec_to_nwb.processing.nwb.components.mda.time.valid.fl_mda_valid_time_manager) FlNwbElectrodeGroup (class in processing.nwb.components.electrode_group.fl_nwb_electrode_group) (class in rec_to_nwb.processing.nwb.components.electrode_group.fl_nwb_electrode_group) FlNwbElectrodeGroupBuilder (class in rec_to_nwb.processing.nwb.components.electrode_group.fl_nwb_electrode_group_builder) FlNwbElectrodeGroupManager (class in rec_to_nwb.processing.nwb.components.electrode_group.fl_nwb_electrode_group_manager) FlPosInvalidTime (class in processing.nwb.components.position.time.invalid.fl_pos_invalid_time) (class in rec_to_nwb.processing.nwb.components.position.time.invalid.fl_pos_invalid_time) FlPosInvalidTimeBuilder (class in rec_to_nwb.processing.nwb.components.position.time.invalid.fl_pos_invalid_time_builder) FlPosInvalidTimeManager (class in rec_to_nwb.processing.nwb.components.position.time.invalid.fl_pos_invalid_time_manager) FlPosition (class in processing.nwb.components.position.fl_position) (class in rec_to_nwb.processing.nwb.components.position.fl_position) FlPositionBuilder (class in processing.nwb.components.position.fl_position_builder) (class in rec_to_nwb.processing.nwb.components.position.fl_position_builder) FlPositionExtractor (class in rec_to_nwb.processing.nwb.components.position.fl_position_extractor) FlPositionManager (class in rec_to_nwb.processing.nwb.components.position.fl_position_manager) FlPosValidTime (class in processing.nwb.components.position.time.valid.fl_pos_valid_time) (class in rec_to_nwb.processing.nwb.components.position.time.valid.fl_pos_valid_time) FlPosValidTimeBuilder (class in rec_to_nwb.processing.nwb.components.position.time.valid.fl_pos_valid_time_builder) FlPosValidTimeManager (class in rec_to_nwb.processing.nwb.components.position.time.valid.fl_pos_valid_time_manager) FlProbe (class in processing.nwb.components.device.probe.fl_probe) (class in rec_to_nwb.processing.nwb.components.device.probe.fl_probe) FlProbeBuilder (class in processing.nwb.components.device.probe.fl_probe_builder) (class in rec_to_nwb.processing.nwb.components.device.probe.fl_probe_builder) FlProbeManager (class in processing.nwb.components.device.probe.fl_probe_manager) (class in rec_to_nwb.processing.nwb.components.device.probe.fl_probe_manager) FlProbesExtractor (class in processing.nwb.components.device.probe.fl_probe_extractor) (class in rec_to_nwb.processing.nwb.components.device.probe.fl_probe_extractor) FlShank (class in processing.nwb.components.device.probe.shanks.fl_shank) (class in rec_to_nwb.processing.nwb.components.device.probe.shanks.fl_shank) FlShankBuilder (class in processing.nwb.components.device.probe.shanks.fl_shank_builder) (class in rec_to_nwb.processing.nwb.components.device.probe.shanks.fl_shank_builder) FlShankManager (class in processing.nwb.components.device.probe.shanks.fl_shank_manager) (class in rec_to_nwb.processing.nwb.components.device.probe.shanks.fl_shank_manager) FlShanksElectrode (class in processing.nwb.components.device.probe.shanks_electrodes.fl_shanks_electrode) (class in rec_to_nwb.processing.nwb.components.device.probe.shanks_electrodes.fl_shanks_electrode) FlShanksElectrodeBuilder (class in processing.nwb.components.device.probe.shanks_electrodes.fl_shanks_electrode_builder) (class in rec_to_nwb.processing.nwb.components.device.probe.shanks_electrodes.fl_shanks_electrode_builder) FlShanksElectrodeManager (class in processing.nwb.components.device.probe.shanks_electrodes.fl_shanks_electrode_manager) (class in rec_to_nwb.processing.nwb.components.device.probe.shanks_electrodes.fl_shanks_electrode_manager) FlTask (class in processing.nwb.components.task.fl_task) (class in rec_to_nwb.processing.nwb.components.task.fl_task) FlVideoFile (class in rec_to_nwb.processing.nwb.components.video_files.fl_video_file) FlVideoFilesBuilder (class in rec_to_nwb.processing.nwb.components.video_files.fl_video_files_builder) FlVideoFilesExtractor (class in rec_to_nwb.processing.nwb.components.video_files.fl_video_files_extractor) FlVideoFilesManager (class in rec_to_nwb.processing.nwb.components.video_files.fl_video_files_manager)

G

get_all_animals() (DataScanner method) get_all_data_from_dataset() (DataScanner method) (Dataset method), [1] get_all_datasets() (DataScanner method) get_all_epochs() (DataScanner method) get_all_experiment_dates() (DataScanner method) get_analog() (FlAnalogManager method) get_column_labels() (PosDataManager method) get_column_labels_as_string() (PosDataManager method) get_columns_labels() (FlPositionExtractor method) get_continuous_time() (Dataset method), [1] get_continuous_time_dict() (ContinuousTimeExtractor static method) get_continuous_time_dict_file() (ContinuousTimeExtractor static method) get_data() (FlMdaExtractor method) (FlMdaManager method) get_data_from_file() (MultiThreadDataIterator static method) (TimestampIterator static method) get_data_path_from_dataset() (Dataset method), [1] get_dio() (DioManager method) get_directories() (DataManager method) get_epochs() (FlEpochsManager method) get_file_lenghts_in_datasets() (DataManager method) (TimestampManager method) get_files() (AnalogFiles method), [1] (DioFiles method), [1] get_final_data_shape() (DataManager method) (TimestampManager method) get_fl_associated_files() (FlAssociatedFilesManager method), [1] get_fl_data_acq_device() (FlDataAcqDeviceManager method), [1] get_fl_device_manager() (FlCameraDeviceManager method), [1] get_fl_electrode_groups() (FlElectrodeGroupManager method) get_fl_electrodes() (FlElectrodeManager method) get_fl_electrodes_extension() (FlElectrodeExtensionManager method) get_fl_header_device() (FlHeaderDeviceManager method), [1]

get_fl_mda_invalid_times() (FlMdaInvalidTimeManager method), [1] get_fl_mda_valid_times() (FlMdaValidTimeManager method), [1] get_fl_nwb_electrode_groups() (FlNwbElectrodeGroupManager method), [1] get_fl_pos_invalid_times() (FlPosInvalidTimeManager method), [1] get_fl_pos_valid_times() (FlPosValidTimeManager method), [1] get_fl_positions() (FlPositionManager method) get_fl_probes() (FlProbeManager method), [1] get_fl_shanks_dict() (FlShankManager method), [1] get_fl_shanks_electrodes_dict() (FlShanksElectrodeManager method), [1] get_fl_tasks() (TaskManager method) get_mda_timestamps() (DataScanner method) (Dataset method), [1] get_missing_metadata() (MetadataValidator method), [1] get_missing_preprocessing_data() (PreprocessingValidator method), [1] get_number_of_datasets() (DataManager method) (TimestampManager method) get_number_of_files_per_dataset() (DataManager method) get_number_of_rows_per_file() (DataManager method) get_positions() (FlPositionExtractor method) get_probes_from_directory() (DataScanner static method) get_rec_path() (XMLExtractor method), [1] get_selection() (DataIterator static method) get_session_start_time() (SessionTimeExtractor method) get_tags() (EpochsTagExtractor method), [1] get_times_period_multiplier() (in module processing.tools.get_times_period_multiplier) (in module rec_to_nwb.processing.tools.get_times_period_multiplier) get_timeseries() (CameraSampleFrameCountsManager method) (SampleCountTimestampCorespondenceManager method) get_timestamps() (FlPositionExtractor method) get_valid_map_dict() (CorruptedDataManager method) get_video_files() (FlVideoFilesManager method) get_xml_path() (XMLExtractor method), [1] GlobalConfiguration (class in processing.header.module.global_configuration) (class in rec_to_nwb.processing.header.module.global_configuration)

H

HardwareConfiguration (class in processing.header.module.hardware_configuration) (class in rec_to_nwb.processing.header.module.hardware_configuration) Header (class in rec_to_nwb.processing.header.module.header) HeaderComparator (class in rec_to_nwb.processing.header.header_checker.header_comparator)

HeaderDeviceOriginator (class in rec_to_nwb.processing.builder.originators.header_device_originator) HeaderFilesExtractor (class in rec_to_nwb.processing.header.header_checker.header_extractor) HeaderLogger (class in processing.header.header_checker.header_logger) (class in rec_to_nwb.processing.header.header_checker.header_logger) HeaderProcessor (class in rec_to_nwb.processing.header.header_checker.header_processor)

I

inject() (AnalogInjector method), [1] (AssociatedFilesInjector class method), [1] (CameraSampleFrameCountsInjector static method), [1] (DioInjector method), [1] (EpochsInjector static method), [1] (MdaInvalidTimeInjector static method) (MdaValidTimeInjector static method) (PosInvalidTimeInjector static method) (PosValidTimeInjector static method) (SampleCountTimestampCorespondenceInjector static method), [1] inject_all() (MdaInvalidTimeInjector method) (MdaValidTimeInjector method) (PosInvalidTimeInjector method) (PosValidTimeInjector method) (VideoFilesInjector static method) inject_all_devices() (DeviceInjector method) inject_all_electrode_groups() (ElectrodeGroupInjector method) inject_extensions() (ElectrodeExtensionInjector method)

inject_mda() (MdaInjector static method), [1] insert() (ProcessingModuleCreator method) InvalidException, [1] InvalidHeaderException, [1] InvalidInputException, [1] InvalidMetadataException, [1] InvalidPathException, [1] InvalidXMLException, [1] is_valid() (AssociatedFilesValidationSummary method), [1] (MetadataValidationSummary method), [1] (NotEmptyValidationSummary method), [1] (NTrodeValidationSummary method), [1] (PathValidationSummary method), [1] (PreprocessingValidationSummary method), [1] (TaskValidationSummary method), [1] (ValidationSummary method), [1] (XMLExtractor method), [1] (XmlFilesValidationSummary method), [1]

L

log_header_differences() (HeaderLogger static method), [1] logger (in module rec_to_nwb.processing.builder.nwb_file_builder) (in module rec_to_nwb.processing.builder.originators.associated_files_originator) (in module rec_to_nwb.processing.builder.originators.camera_device_originator) (in module rec_to_nwb.processing.builder.originators.camera_sample_frame_counts_originator) (in module rec_to_nwb.processing.builder.originators.data_acq_device_originator) (in module rec_to_nwb.processing.builder.originators.dio_originator) (in module rec_to_nwb.processing.builder.originators.electrode_group_originator) (in module rec_to_nwb.processing.builder.originators.electrodes_extension_originator) (in module rec_to_nwb.processing.builder.originators.electrodes_originator) (in module rec_to_nwb.processing.builder.originators.epochs_originator) (in module rec_to_nwb.processing.builder.originators.header_device_originator) (in module rec_to_nwb.processing.builder.originators.mda_invalid_time_originator) (in module rec_to_nwb.processing.builder.originators.mda_originator) (in module rec_to_nwb.processing.builder.originators.mda_valid_time_originator) (in module rec_to_nwb.processing.builder.originators.pos_invalid_originator) (in module rec_to_nwb.processing.builder.originators.pos_valid_time_originator) (in module rec_to_nwb.processing.builder.originators.position_originator) (in module rec_to_nwb.processing.builder.originators.probe_originator) (in module rec_to_nwb.processing.builder.originators.processing_module_originator) (in module rec_to_nwb.processing.builder.originators.sample_count_timestamp_corespondence_originator) (in module rec_to_nwb.processing.builder.originators.shanks_electrodes_originator) (in module rec_to_nwb.processing.builder.originators.shanks_originator) (in module rec_to_nwb.processing.builder.originators.task_originator) (in module rec_to_nwb.processing.builder.raw_to_nwb_builder) (in module rec_to_nwb.processing.header.header_checker.header_logger) (in module rec_to_nwb.processing.nwb.common.timestamps_manager) (in module rec_to_nwb.processing.nwb.components.analog.fl_analog_extractor) (in module rec_to_nwb.processing.nwb.components.dio.dio_extractor) (in module rec_to_nwb.processing.nwb.components.electrodes.extension.electrode_extension_injector) (in module rec_to_nwb.processing.nwb.components.electrodes.extension.fl_electrode_extension_manager) (in module rec_to_nwb.processing.nwb.components.mda.mda_timestamp_manager) (in module rec_to_nwb.processing.nwb.components.position.pos_timestamp_manager) (in module rec_to_nwb.processing.nwb.components.processing_module.processing_module_creator) (in module rec_to_nwb.processing.time.continuous_time_extractor) (in module rec_to_nwb.processing.time.timestamp_converter) (in module rec_to_nwb.processing.tools.file_downloader) (in module rec_to_nwb.processing.validation.associated_files_validation) (in module rec_to_nwb.processing.validation.ntrode_validator)

M

make() (AnalogOriginator method) (AssociatedFilesOriginator method) (CameraDeviceOriginator method) (CameraSampleFrameCountsOriginator method) (DataAcqDeviceOriginator method) (DioOriginator method) (ElectrodeGroupOriginator method) (ElectrodesExtensionOriginator method) (ElectrodesOriginator method) (EpochsOriginator method) (HeaderDeviceOriginator method) (MdaInvalidTimeOriginator method) (MdaOriginator method) (MdaValidTimeOriginator method) (PosInvalidTimeOriginator method) (PositionOriginator method) (PosValidTimeOriginator method) (ProbeOriginator method) (ProcessingModuleOriginator static method) (SampleCountTimestampCorespondenceOriginator method) (ShanksElectrodeOriginator method) (ShanksOriginator method) (TaskOriginator method) (VideoFilesOriginator method) maxshape() (DataIterator property) (TimestampIterator property) MdaContent (class in processing.nwb.components.mda.mda_content) (class in rec_to_nwb.processing.nwb.components.mda.mda_content) MdaDataManager (class in rec_to_nwb.processing.nwb.components.mda.mda_data_manager) MdaInjector (class in processing.nwb.components.mda.mda_injector) (class in rec_to_nwb.processing.nwb.components.mda.mda_injector) MdaInvalidTimeInjector (class in rec_to_nwb.processing.nwb.components.mda.time.invalid.mda_invalid_time_injector) MdaInvalidTimeOriginator (class in rec_to_nwb.processing.builder.originators.mda_invalid_time_originator) MdaOriginator (class in rec_to_nwb.processing.builder.originators.mda_originator) MdaTimestampDataManager (class in rec_to_nwb.processing.nwb.components.mda.mda_timestamp_manager) MdaValidTimeInjector (class in rec_to_nwb.processing.nwb.components.mda.time.valid.mda_valid_time_injector) MdaValidTimeOriginator (class in rec_to_nwb.processing.builder.originators.mda_valid_time_originator) MetadataExtractor (class in processing.metadata.metadata_extractor) (class in rec_to_nwb.processing.metadata.metadata_extractor) MetadataManager (class in rec_to_nwb.processing.metadata.metadata_manager) MetadataSectionValidator (class in processing.validation.metadata_section_validator) (class in rec_to_nwb.processing.validation.metadata_section_validator) MetadataValidationSummary (class in processing.validation.metadata_validation_summary) (class in rec_to_nwb.processing.validation.metadata_validation_summary) MetadataValidator (class in processing.validation.metadata_validator) (class in rec_to_nwb.processing.validation.metadata_validator) MissingDataException, [1] module processing processing.builder processing.builder.originators processing.exceptions processing.exceptions.invalid_exception processing.exceptions.invalid_header_exception processing.exceptions.invalid_input_exception processing.exceptions.invalid_metadata_exception processing.exceptions.invalid_path_exception processing.exceptions.invalid_xml_exception processing.exceptions.missing_data_exception processing.exceptions.none_param_exception processing.exceptions.not_compatible_metadata processing.exceptions.not_equal_param_length_exception processing.header processing.header.header_checker processing.header.header_checker.header_logger processing.header.header_checker.rec_file_finder processing.header.module processing.header.module.argument processing.header.module.aux_display_configuration processing.header.module.channel processing.header.module.configuration processing.header.module.device processing.header.module.disp_channel processing.header.module.global_configuration processing.header.module.hardware_configuration processing.header.module.module_configuration processing.header.module.single_module_configuration processing.header.module.spike_channel processing.header.module.spike_configuration processing.header.module.spike_n_trode processing.header.module.stream_display processing.metadata processing.metadata.metadata_extractor processing.nwb processing.nwb.common processing.nwb.components processing.nwb.components.analog processing.nwb.components.analog.analog_files processing.nwb.components.analog.analog_injector processing.nwb.components.analog.fl_analog processing.nwb.components.associated_files processing.nwb.components.associated_files.associated_files_injector processing.nwb.components.associated_files.fl_associated_files_manager processing.nwb.components.associated_files.fl_associated_files_reader processing.nwb.components.device processing.nwb.components.device.acq processing.nwb.components.device.acq.fl_data_acq_device processing.nwb.components.device.acq.fl_data_acq_device_manager processing.nwb.components.device.camera processing.nwb.components.device.camera.fl_camera_device processing.nwb.components.device.camera.fl_camera_device_manager processing.nwb.components.device.fl_device processing.nwb.components.device.header processing.nwb.components.device.header.fl_header_device processing.nwb.components.device.header.fl_header_device_manager processing.nwb.components.device.probe processing.nwb.components.device.probe.fl_probe processing.nwb.components.device.probe.fl_probe_builder processing.nwb.components.device.probe.fl_probe_extractor processing.nwb.components.device.probe.fl_probe_manager processing.nwb.components.device.probe.shanks processing.nwb.components.device.probe.shanks.fl_shank processing.nwb.components.device.probe.shanks.fl_shank_builder processing.nwb.components.device.probe.shanks.fl_shank_manager processing.nwb.components.device.probe.shanks_electrodes processing.nwb.components.device.probe.shanks_electrodes.fl_shanks_electrode processing.nwb.components.device.probe.shanks_electrodes.fl_shanks_electrode_builder processing.nwb.components.device.probe.shanks_electrodes.fl_shanks_electrode_manager processing.nwb.components.dio processing.nwb.components.dio.dio_files processing.nwb.components.dio.dio_injector processing.nwb.components.electrode_group processing.nwb.components.electrode_group.fl_electrode_group processing.nwb.components.electrode_group.fl_nwb_electrode_group processing.nwb.components.electrodes processing.nwb.components.electrodes.extension processing.nwb.components.electrodes.extension.fl_electrode_extension processing.nwb.components.electrodes.extension.fl_electrode_extension_factory processing.nwb.components.electrodes.fl_electrodes processing.nwb.components.epochs processing.nwb.components.epochs.epochs_injector processing.nwb.components.epochs.epochs_tag_extractor processing.nwb.components.epochs.fl_epochs processing.nwb.components.epochs.fl_epochs_builder processing.nwb.components.iterator processing.nwb.components.mda processing.nwb.components.mda.fl_mda processing.nwb.components.mda.fl_mda_builder processing.nwb.components.mda.mda_content processing.nwb.components.mda.mda_injector processing.nwb.components.mda.table_region_builder processing.nwb.components.mda.time processing.nwb.components.mda.time.invalid processing.nwb.components.mda.time.invalid.fl_mda_invalid_time processing.nwb.components.mda.time.valid processing.nwb.components.mda.time.valid.fl_mda_valid_time processing.nwb.components.position processing.nwb.components.position.fl_position processing.nwb.components.position.fl_position_builder processing.nwb.components.position.time processing.nwb.components.position.time.invalid processing.nwb.components.position.time.invalid.fl_pos_invalid_time processing.nwb.components.position.time.valid processing.nwb.components.position.time.valid.fl_pos_valid_time processing.nwb.components.processing_module processing.nwb.components.sample_count_timestamp_corespondence processing.nwb.components.sample_count_timestamp_corespondence.sample_count_timestamp_corespondence_injector processing.nwb.components.task processing.nwb.components.task.fl_task processing.nwb.components.task.task_builder processing.nwb.components.video_files processing.nwb.components.video_files.camera_sample_frame_counts processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts_injector processing.nwb.components.video_files.video_files_copy_maker processing.time processing.tools processing.tools.abstract_file_downloader processing.tools.beartype processing.tools.beartype.beartype processing.tools.count_electrodes_in_ntrode processing.tools.count_electrodes_in_probe processing.tools.dataset processing.tools.file_downloader processing.tools.file_sorter processing.tools.filter_probe_by_type processing.tools.get_times_period_multiplier processing.tools.validate_parameters processing.validation processing.validation.associated_files_validation processing.validation.associated_files_validation_summary processing.validation.metadata_section_validator processing.validation.metadata_validation_summary processing.validation.metadata_validator processing.validation.not_empty_validation_summary processing.validation.not_empty_validator processing.validation.ntrode_validation_summary processing.validation.path_validation_summary processing.validation.path_validator processing.validation.preprocessing_validation_summary processing.validation.preprocessing_validator processing.validation.task_validation_summary processing.validation.task_validator processing.validation.validation_registrator processing.validation.validation_summary processing.validation.validator processing.validation.xml_files_validation processing.validation.xml_files_validation_summary rec_to_nwb.processing rec_to_nwb.processing.builder rec_to_nwb.processing.builder.nwb_file_builder rec_to_nwb.processing.builder.originators rec_to_nwb.processing.builder.originators.analog_originator rec_to_nwb.processing.builder.originators.associated_files_originator rec_to_nwb.processing.builder.originators.camera_device_originator rec_to_nwb.processing.builder.originators.camera_sample_frame_counts_originator rec_to_nwb.processing.builder.originators.data_acq_device_originator rec_to_nwb.processing.builder.originators.dio_originator rec_to_nwb.processing.builder.originators.electrode_group_originator rec_to_nwb.processing.builder.originators.electrodes_extension_originator rec_to_nwb.processing.builder.originators.electrodes_originator rec_to_nwb.processing.builder.originators.epochs_originator rec_to_nwb.processing.builder.originators.header_device_originator rec_to_nwb.processing.builder.originators.mda_invalid_time_originator rec_to_nwb.processing.builder.originators.mda_originator rec_to_nwb.processing.builder.originators.mda_valid_time_originator rec_to_nwb.processing.builder.originators.pos_invalid_originator rec_to_nwb.processing.builder.originators.pos_valid_time_originator rec_to_nwb.processing.builder.originators.position_originator rec_to_nwb.processing.builder.originators.probe_originator rec_to_nwb.processing.builder.originators.processing_module_originator rec_to_nwb.processing.builder.originators.sample_count_timestamp_corespondence_originator rec_to_nwb.processing.builder.originators.shanks_electrodes_originator rec_to_nwb.processing.builder.originators.shanks_originator rec_to_nwb.processing.builder.originators.task_originator rec_to_nwb.processing.builder.originators.video_files_originator rec_to_nwb.processing.builder.raw_to_nwb_builder rec_to_nwb.processing.exceptions rec_to_nwb.processing.exceptions.corrupted_data_exception rec_to_nwb.processing.exceptions.invalid_exception rec_to_nwb.processing.exceptions.invalid_header_exception rec_to_nwb.processing.exceptions.invalid_input_exception rec_to_nwb.processing.exceptions.invalid_metadata_exception rec_to_nwb.processing.exceptions.invalid_path_exception rec_to_nwb.processing.exceptions.invalid_xml_exception rec_to_nwb.processing.exceptions.missing_data_exception rec_to_nwb.processing.exceptions.none_param_exception rec_to_nwb.processing.exceptions.not_compatible_metadata rec_to_nwb.processing.exceptions.not_equal_param_length_exception rec_to_nwb.processing.header rec_to_nwb.processing.header.header_checker rec_to_nwb.processing.header.header_checker.header_comparator rec_to_nwb.processing.header.header_checker.header_extractor rec_to_nwb.processing.header.header_checker.header_logger rec_to_nwb.processing.header.header_checker.header_processor rec_to_nwb.processing.header.header_checker.rec_file_finder rec_to_nwb.processing.header.module rec_to_nwb.processing.header.module.argument rec_to_nwb.processing.header.module.aux_display_configuration rec_to_nwb.processing.header.module.channel rec_to_nwb.processing.header.module.configuration rec_to_nwb.processing.header.module.device rec_to_nwb.processing.header.module.disp_channel rec_to_nwb.processing.header.module.global_configuration rec_to_nwb.processing.header.module.hardware_configuration rec_to_nwb.processing.header.module.header rec_to_nwb.processing.header.module.module_configuration rec_to_nwb.processing.header.module.single_module_configuration rec_to_nwb.processing.header.module.spike_channel rec_to_nwb.processing.header.module.spike_configuration rec_to_nwb.processing.header.module.spike_n_trode rec_to_nwb.processing.header.module.stream_display rec_to_nwb.processing.header.reconfig_header_checker rec_to_nwb.processing.header.xml_extractor rec_to_nwb.processing.metadata rec_to_nwb.processing.metadata.corrupted_data_manager rec_to_nwb.processing.metadata.metadata_extractor rec_to_nwb.processing.metadata.metadata_manager rec_to_nwb.processing.nwb rec_to_nwb.processing.nwb.common rec_to_nwb.processing.nwb.common.data_manager rec_to_nwb.processing.nwb.common.session_time_extractor rec_to_nwb.processing.nwb.common.timestamps_manager rec_to_nwb.processing.nwb.components rec_to_nwb.processing.nwb.components.analog rec_to_nwb.processing.nwb.components.analog.analog_creator rec_to_nwb.processing.nwb.components.analog.analog_files rec_to_nwb.processing.nwb.components.analog.analog_injector rec_to_nwb.processing.nwb.components.analog.fl_analog rec_to_nwb.processing.nwb.components.analog.fl_analog_builder rec_to_nwb.processing.nwb.components.analog.fl_analog_extractor rec_to_nwb.processing.nwb.components.analog.fl_analog_manager rec_to_nwb.processing.nwb.components.associated_files rec_to_nwb.processing.nwb.components.associated_files.associated_files_creator rec_to_nwb.processing.nwb.components.associated_files.associated_files_injector rec_to_nwb.processing.nwb.components.associated_files.fl_associated_file rec_to_nwb.processing.nwb.components.associated_files.fl_associated_files_builder rec_to_nwb.processing.nwb.components.associated_files.fl_associated_files_manager rec_to_nwb.processing.nwb.components.associated_files.fl_associated_files_reader rec_to_nwb.processing.nwb.components.device rec_to_nwb.processing.nwb.components.device.acq rec_to_nwb.processing.nwb.components.device.acq.fl_data_acq_device rec_to_nwb.processing.nwb.components.device.acq.fl_data_acq_device_builder rec_to_nwb.processing.nwb.components.device.acq.fl_data_acq_device_manager rec_to_nwb.processing.nwb.components.device.camera rec_to_nwb.processing.nwb.components.device.camera.fl_camera_device rec_to_nwb.processing.nwb.components.device.camera.fl_camera_device_builder rec_to_nwb.processing.nwb.components.device.camera.fl_camera_device_manager rec_to_nwb.processing.nwb.components.device.device_factory rec_to_nwb.processing.nwb.components.device.device_injector rec_to_nwb.processing.nwb.components.device.fl_device rec_to_nwb.processing.nwb.components.device.header rec_to_nwb.processing.nwb.components.device.header.fl_header_device rec_to_nwb.processing.nwb.components.device.header.fl_header_device_builder rec_to_nwb.processing.nwb.components.device.header.fl_header_device_manager rec_to_nwb.processing.nwb.components.device.probe rec_to_nwb.processing.nwb.components.device.probe.fl_probe rec_to_nwb.processing.nwb.components.device.probe.fl_probe_builder rec_to_nwb.processing.nwb.components.device.probe.fl_probe_extractor rec_to_nwb.processing.nwb.components.device.probe.fl_probe_manager rec_to_nwb.processing.nwb.components.device.probe.shanks rec_to_nwb.processing.nwb.components.device.probe.shanks.fl_shank rec_to_nwb.processing.nwb.components.device.probe.shanks.fl_shank_builder rec_to_nwb.processing.nwb.components.device.probe.shanks.fl_shank_manager rec_to_nwb.processing.nwb.components.device.probe.shanks.shank_creator rec_to_nwb.processing.nwb.components.device.probe.shanks_electrodes rec_to_nwb.processing.nwb.components.device.probe.shanks_electrodes.fl_shanks_electrode rec_to_nwb.processing.nwb.components.device.probe.shanks_electrodes.fl_shanks_electrode_builder rec_to_nwb.processing.nwb.components.device.probe.shanks_electrodes.fl_shanks_electrode_manager rec_to_nwb.processing.nwb.components.device.probe.shanks_electrodes.shanks_electrode_creator rec_to_nwb.processing.nwb.components.dio rec_to_nwb.processing.nwb.components.dio.dio_builder rec_to_nwb.processing.nwb.components.dio.dio_extractor rec_to_nwb.processing.nwb.components.dio.dio_files rec_to_nwb.processing.nwb.components.dio.dio_injector rec_to_nwb.processing.nwb.components.dio.dio_manager rec_to_nwb.processing.nwb.components.electrode_group rec_to_nwb.processing.nwb.components.electrode_group.electrode_group_factory rec_to_nwb.processing.nwb.components.electrode_group.electrode_group_injector rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group_builder rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group_manager rec_to_nwb.processing.nwb.components.electrode_group.fl_nwb_electrode_group rec_to_nwb.processing.nwb.components.electrode_group.fl_nwb_electrode_group_builder rec_to_nwb.processing.nwb.components.electrode_group.fl_nwb_electrode_group_manager rec_to_nwb.processing.nwb.components.electrodes rec_to_nwb.processing.nwb.components.electrodes.electrode_creator rec_to_nwb.processing.nwb.components.electrodes.extension rec_to_nwb.processing.nwb.components.electrodes.extension.electrode_extension_injector rec_to_nwb.processing.nwb.components.electrodes.extension.fl_electrode_extension rec_to_nwb.processing.nwb.components.electrodes.extension.fl_electrode_extension_builder rec_to_nwb.processing.nwb.components.electrodes.extension.fl_electrode_extension_factory rec_to_nwb.processing.nwb.components.electrodes.extension.fl_electrode_extension_manager rec_to_nwb.processing.nwb.components.electrodes.fl_electrode_builder rec_to_nwb.processing.nwb.components.electrodes.fl_electrode_manager rec_to_nwb.processing.nwb.components.electrodes.fl_electrodes rec_to_nwb.processing.nwb.components.epochs rec_to_nwb.processing.nwb.components.epochs.epochs_injector rec_to_nwb.processing.nwb.components.epochs.epochs_tag_extractor rec_to_nwb.processing.nwb.components.epochs.fl_epochs rec_to_nwb.processing.nwb.components.epochs.fl_epochs_builder rec_to_nwb.processing.nwb.components.epochs.fl_epochs_extractor rec_to_nwb.processing.nwb.components.epochs.fl_epochs_manager rec_to_nwb.processing.nwb.components.iterator rec_to_nwb.processing.nwb.components.iterator.data_iterator rec_to_nwb.processing.nwb.components.iterator.multi_thread_data_iterator rec_to_nwb.processing.nwb.components.iterator.multi_thread_timestamp_iterator rec_to_nwb.processing.nwb.components.iterator.single_thread_data_iterator rec_to_nwb.processing.nwb.components.iterator.single_thread_timestamp_iterator rec_to_nwb.processing.nwb.components.iterator.timestamp_iterator rec_to_nwb.processing.nwb.components.mda rec_to_nwb.processing.nwb.components.mda.electrical_series_creator rec_to_nwb.processing.nwb.components.mda.fl_mda rec_to_nwb.processing.nwb.components.mda.fl_mda_builder rec_to_nwb.processing.nwb.components.mda.fl_mda_extractor rec_to_nwb.processing.nwb.components.mda.fl_mda_manager rec_to_nwb.processing.nwb.components.mda.mda_content rec_to_nwb.processing.nwb.components.mda.mda_data_manager rec_to_nwb.processing.nwb.components.mda.mda_injector rec_to_nwb.processing.nwb.components.mda.mda_timestamp_manager rec_to_nwb.processing.nwb.components.mda.table_region_builder rec_to_nwb.processing.nwb.components.mda.time rec_to_nwb.processing.nwb.components.mda.time.invalid rec_to_nwb.processing.nwb.components.mda.time.invalid.fl_mda_invalid_time rec_to_nwb.processing.nwb.components.mda.time.invalid.fl_mda_invalid_time_builder rec_to_nwb.processing.nwb.components.mda.time.invalid.fl_mda_invalid_time_manager rec_to_nwb.processing.nwb.components.mda.time.invalid.mda_invalid_time_injector rec_to_nwb.processing.nwb.components.mda.time.valid rec_to_nwb.processing.nwb.components.mda.time.valid.fl_mda_valid_time rec_to_nwb.processing.nwb.components.mda.time.valid.fl_mda_valid_time_builder rec_to_nwb.processing.nwb.components.mda.time.valid.fl_mda_valid_time_manager rec_to_nwb.processing.nwb.components.mda.time.valid.mda_valid_time_injector rec_to_nwb.processing.nwb.components.position rec_to_nwb.processing.nwb.components.position.fl_position rec_to_nwb.processing.nwb.components.position.fl_position_builder rec_to_nwb.processing.nwb.components.position.fl_position_extractor rec_to_nwb.processing.nwb.components.position.fl_position_manager rec_to_nwb.processing.nwb.components.position.pos_data_manager rec_to_nwb.processing.nwb.components.position.pos_timestamp_manager rec_to_nwb.processing.nwb.components.position.position_creator rec_to_nwb.processing.nwb.components.position.time rec_to_nwb.processing.nwb.components.position.time.invalid rec_to_nwb.processing.nwb.components.position.time.invalid.fl_pos_invalid_time rec_to_nwb.processing.nwb.components.position.time.invalid.fl_pos_invalid_time_builder rec_to_nwb.processing.nwb.components.position.time.invalid.fl_pos_invalid_time_manager rec_to_nwb.processing.nwb.components.position.time.invalid.pos_invalid_time_injector rec_to_nwb.processing.nwb.components.position.time.valid rec_to_nwb.processing.nwb.components.position.time.valid.fl_pos_valid_time rec_to_nwb.processing.nwb.components.position.time.valid.fl_pos_valid_time_builder rec_to_nwb.processing.nwb.components.position.time.valid.fl_pos_valid_time_manager rec_to_nwb.processing.nwb.components.position.time.valid.pos_valid_time_injector rec_to_nwb.processing.nwb.components.processing_module rec_to_nwb.processing.nwb.components.processing_module.processing_module_creator rec_to_nwb.processing.nwb.components.sample_count_timestamp_corespondence rec_to_nwb.processing.nwb.components.sample_count_timestamp_corespondence.sample_count_timestamp_corespondence_builder rec_to_nwb.processing.nwb.components.sample_count_timestamp_corespondence.sample_count_timestamp_corespondence_extractor rec_to_nwb.processing.nwb.components.sample_count_timestamp_corespondence.sample_count_timestamp_corespondence_injector rec_to_nwb.processing.nwb.components.sample_count_timestamp_corespondence.sample_count_timestamp_corespondence_manager rec_to_nwb.processing.nwb.components.task rec_to_nwb.processing.nwb.components.task.fl_task rec_to_nwb.processing.nwb.components.task.task_builder rec_to_nwb.processing.nwb.components.task.task_creator rec_to_nwb.processing.nwb.components.task.task_manager rec_to_nwb.processing.nwb.components.video_files rec_to_nwb.processing.nwb.components.video_files.camera_sample_frame_counts rec_to_nwb.processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts rec_to_nwb.processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts_builder rec_to_nwb.processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts_extractor rec_to_nwb.processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts_injector rec_to_nwb.processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts_manager rec_to_nwb.processing.nwb.components.video_files.fl_video_file rec_to_nwb.processing.nwb.components.video_files.fl_video_files_builder rec_to_nwb.processing.nwb.components.video_files.fl_video_files_extractor rec_to_nwb.processing.nwb.components.video_files.fl_video_files_manager rec_to_nwb.processing.nwb.components.video_files.video_files_copy_maker rec_to_nwb.processing.nwb.components.video_files.video_files_creator rec_to_nwb.processing.nwb.components.video_files.video_files_injector rec_to_nwb.processing.time rec_to_nwb.processing.time.continuous_time_extractor rec_to_nwb.processing.time.timestamp_converter rec_to_nwb.processing.tools rec_to_nwb.processing.tools.abstract_file_downloader rec_to_nwb.processing.tools.beartype rec_to_nwb.processing.tools.beartype.beartype rec_to_nwb.processing.tools.count_electrodes_in_ntrode rec_to_nwb.processing.tools.count_electrodes_in_probe rec_to_nwb.processing.tools.data_scanner rec_to_nwb.processing.tools.dataset rec_to_nwb.processing.tools.file_downloader rec_to_nwb.processing.tools.file_sorter rec_to_nwb.processing.tools.filter_probe_by_type rec_to_nwb.processing.tools.get_times_period_multiplier rec_to_nwb.processing.tools.validate_parameters rec_to_nwb.processing.validation rec_to_nwb.processing.validation.associated_files_validation rec_to_nwb.processing.validation.associated_files_validation_summary rec_to_nwb.processing.validation.metadata_section_validator rec_to_nwb.processing.validation.metadata_validation_summary rec_to_nwb.processing.validation.metadata_validator rec_to_nwb.processing.validation.not_empty_validation_summary rec_to_nwb.processing.validation.not_empty_validator rec_to_nwb.processing.validation.ntrode_validation_summary rec_to_nwb.processing.validation.ntrode_validator rec_to_nwb.processing.validation.path_validation_summary rec_to_nwb.processing.validation.path_validator rec_to_nwb.processing.validation.preprocessing_validation_summary rec_to_nwb.processing.validation.preprocessing_validator rec_to_nwb.processing.validation.task_validation_summary rec_to_nwb.processing.validation.task_validator rec_to_nwb.processing.validation.validation_registrator rec_to_nwb.processing.validation.validation_summary rec_to_nwb.processing.validation.validator rec_to_nwb.processing.validation.xml_files_validation rec_to_nwb.processing.validation.xml_files_validation_summary

ModuleConfiguration (class in processing.header.module.module_configuration) (class in rec_to_nwb.processing.header.module.module_configuration) MultiThreadDataIterator (class in rec_to_nwb.processing.nwb.components.iterator.multi_thread_data_iterator) MultiThreadTimestampIterator (class in rec_to_nwb.processing.nwb.components.iterator.multi_thread_timestamp_iterator)

N

next (MultiThreadDataIterator attribute) (MultiThreadTimestampIterator attribute) (SingleThreadDataIterator attribute) (SingleThreadTimestampIterator attribute) NoneParamException, [1] NotCompatibleMetadata, [1] NotEmptyValidationSummary (class in processing.validation.not_empty_validation_summary) (class in rec_to_nwb.processing.validation.not_empty_validation_summary)

NotEmptyValidator (class in processing.validation.not_empty_validator) (class in rec_to_nwb.processing.validation.not_empty_validator) NotEqualParamLengthException, [1] NTrodeValidationSummary (class in processing.validation.ntrode_validation_summary) (class in rec_to_nwb.processing.validation.ntrode_validation_summary) NTrodeValidator (class in rec_to_nwb.processing.validation.ntrode_validator) NWBFileBuilder (class in rec_to_nwb.processing.builder.nwb_file_builder)

P

path (in module rec_to_nwb.processing.builder.nwb_file_builder) (in module rec_to_nwb.processing.builder.originators.associated_files_originator) (in module rec_to_nwb.processing.builder.originators.camera_device_originator) (in module rec_to_nwb.processing.builder.originators.camera_sample_frame_counts_originator) (in module rec_to_nwb.processing.builder.originators.data_acq_device_originator) (in module rec_to_nwb.processing.builder.originators.dio_originator) (in module rec_to_nwb.processing.builder.originators.electrode_group_originator) (in module rec_to_nwb.processing.builder.originators.electrodes_extension_originator) (in module rec_to_nwb.processing.builder.originators.electrodes_originator) (in module rec_to_nwb.processing.builder.originators.epochs_originator) (in module rec_to_nwb.processing.builder.originators.header_device_originator) (in module rec_to_nwb.processing.builder.originators.mda_invalid_time_originator) (in module rec_to_nwb.processing.builder.originators.mda_originator) (in module rec_to_nwb.processing.builder.originators.mda_valid_time_originator) (in module rec_to_nwb.processing.builder.originators.pos_invalid_originator) (in module rec_to_nwb.processing.builder.originators.pos_valid_time_originator) (in module rec_to_nwb.processing.builder.originators.position_originator) (in module rec_to_nwb.processing.builder.originators.probe_originator) (in module rec_to_nwb.processing.builder.originators.processing_module_originator) (in module rec_to_nwb.processing.builder.originators.sample_count_timestamp_corespondence_originator) (in module rec_to_nwb.processing.builder.originators.shanks_electrodes_originator) (in module rec_to_nwb.processing.builder.originators.shanks_originator) (in module rec_to_nwb.processing.builder.originators.task_originator) (in module rec_to_nwb.processing.builder.raw_to_nwb_builder) (in module rec_to_nwb.processing.header.header_checker.header_logger) (in module rec_to_nwb.processing.header.reconfig_header_checker) (in module rec_to_nwb.processing.nwb.common.timestamps_manager) (in module rec_to_nwb.processing.nwb.components.analog.analog_creator) (in module rec_to_nwb.processing.nwb.components.analog.fl_analog_extractor) (in module rec_to_nwb.processing.nwb.components.associated_files.fl_associated_files_reader) (in module rec_to_nwb.processing.nwb.components.dio.dio_builder) (in module rec_to_nwb.processing.nwb.components.dio.dio_extractor) (in module rec_to_nwb.processing.nwb.components.electrodes.extension.electrode_extension_injector) (in module rec_to_nwb.processing.nwb.components.electrodes.extension.fl_electrode_extension_manager) (in module rec_to_nwb.processing.nwb.components.mda.mda_timestamp_manager) (in module rec_to_nwb.processing.nwb.components.position.pos_timestamp_manager) (in module rec_to_nwb.processing.nwb.components.processing_module.processing_module_creator) (in module rec_to_nwb.processing.time.continuous_time_extractor) (in module rec_to_nwb.processing.time.timestamp_converter) (in module rec_to_nwb.processing.tools.file_downloader) (in module rec_to_nwb.processing.validation.associated_files_validation) (in module rec_to_nwb.processing.validation.ntrode_validator) PathValidationSummary (class in processing.validation.path_validation_summary) (class in rec_to_nwb.processing.validation.path_validation_summary) PathValidator (class in processing.validation.path_validator) (class in rec_to_nwb.processing.validation.path_validator) PosDataManager (class in rec_to_nwb.processing.nwb.components.position.pos_data_manager) PosInvalidTimeInjector (class in rec_to_nwb.processing.nwb.components.position.time.invalid.pos_invalid_time_injector) PosInvalidTimeOriginator (class in rec_to_nwb.processing.builder.originators.pos_invalid_originator) PositionCreator (class in rec_to_nwb.processing.nwb.components.position.position_creator) PositionOriginator (class in rec_to_nwb.processing.builder.originators.position_originator) PosTimestampManager (class in rec_to_nwb.processing.nwb.components.position.pos_timestamp_manager) PosValidTimeInjector (class in rec_to_nwb.processing.nwb.components.position.time.valid.pos_valid_time_injector) PosValidTimeOriginator (class in rec_to_nwb.processing.builder.originators.pos_valid_time_originator) PreprocessingValidationSummary (class in processing.validation.preprocessing_validation_summary) (class in rec_to_nwb.processing.validation.preprocessing_validation_summary) PreprocessingValidator (class in processing.validation.preprocessing_validator) (class in rec_to_nwb.processing.validation.preprocessing_validator) ProbeOriginator (class in rec_to_nwb.processing.builder.originators.probe_originator) process_headers() (HeaderProcessor static method) processing module processing.builder module processing.builder.originators module processing.exceptions module processing.exceptions.invalid_exception module processing.exceptions.invalid_header_exception module processing.exceptions.invalid_input_exception module processing.exceptions.invalid_metadata_exception module processing.exceptions.invalid_path_exception module processing.exceptions.invalid_xml_exception module processing.exceptions.missing_data_exception module processing.exceptions.none_param_exception module processing.exceptions.not_compatible_metadata module processing.exceptions.not_equal_param_length_exception module processing.header module processing.header.header_checker module processing.header.header_checker.header_logger module processing.header.header_checker.rec_file_finder module processing.header.module module processing.header.module.argument module processing.header.module.aux_display_configuration module processing.header.module.channel module processing.header.module.configuration module processing.header.module.device module processing.header.module.disp_channel module processing.header.module.global_configuration module processing.header.module.hardware_configuration module processing.header.module.module_configuration module processing.header.module.single_module_configuration module processing.header.module.spike_channel module processing.header.module.spike_configuration module processing.header.module.spike_n_trode module processing.header.module.stream_display module processing.metadata module processing.metadata.metadata_extractor module processing.nwb module processing.nwb.common module processing.nwb.components module processing.nwb.components.analog module processing.nwb.components.analog.analog_files module processing.nwb.components.analog.analog_injector module processing.nwb.components.analog.fl_analog module processing.nwb.components.associated_files module processing.nwb.components.associated_files.associated_files_injector module processing.nwb.components.associated_files.fl_associated_files_manager module processing.nwb.components.associated_files.fl_associated_files_reader module processing.nwb.components.device module processing.nwb.components.device.acq module processing.nwb.components.device.acq.fl_data_acq_device module processing.nwb.components.device.acq.fl_data_acq_device_manager module processing.nwb.components.device.camera module processing.nwb.components.device.camera.fl_camera_device module processing.nwb.components.device.camera.fl_camera_device_manager module processing.nwb.components.device.fl_device module processing.nwb.components.device.header module processing.nwb.components.device.header.fl_header_device module processing.nwb.components.device.header.fl_header_device_manager module processing.nwb.components.device.probe module processing.nwb.components.device.probe.fl_probe module processing.nwb.components.device.probe.fl_probe_builder module processing.nwb.components.device.probe.fl_probe_extractor module

processing.nwb.components.device.probe.fl_probe_manager module processing.nwb.components.device.probe.shanks module processing.nwb.components.device.probe.shanks.fl_shank module processing.nwb.components.device.probe.shanks.fl_shank_builder module processing.nwb.components.device.probe.shanks.fl_shank_manager module processing.nwb.components.device.probe.shanks_electrodes module processing.nwb.components.device.probe.shanks_electrodes.fl_shanks_electrode module processing.nwb.components.device.probe.shanks_electrodes.fl_shanks_electrode_builder module processing.nwb.components.device.probe.shanks_electrodes.fl_shanks_electrode_manager module processing.nwb.components.dio module processing.nwb.components.dio.dio_files module processing.nwb.components.dio.dio_injector module processing.nwb.components.electrode_group module processing.nwb.components.electrode_group.fl_electrode_group module processing.nwb.components.electrode_group.fl_nwb_electrode_group module processing.nwb.components.electrodes module processing.nwb.components.electrodes.extension module processing.nwb.components.electrodes.extension.fl_electrode_extension module processing.nwb.components.electrodes.extension.fl_electrode_extension_factory module processing.nwb.components.electrodes.fl_electrodes module processing.nwb.components.epochs module processing.nwb.components.epochs.epochs_injector module processing.nwb.components.epochs.epochs_tag_extractor module processing.nwb.components.epochs.fl_epochs module processing.nwb.components.epochs.fl_epochs_builder module processing.nwb.components.iterator module processing.nwb.components.mda module processing.nwb.components.mda.fl_mda module processing.nwb.components.mda.fl_mda_builder module processing.nwb.components.mda.mda_content module processing.nwb.components.mda.mda_injector module processing.nwb.components.mda.table_region_builder module processing.nwb.components.mda.time module processing.nwb.components.mda.time.invalid module processing.nwb.components.mda.time.invalid.fl_mda_invalid_time module processing.nwb.components.mda.time.valid module processing.nwb.components.mda.time.valid.fl_mda_valid_time module processing.nwb.components.position module processing.nwb.components.position.fl_position module processing.nwb.components.position.fl_position_builder module processing.nwb.components.position.time module processing.nwb.components.position.time.invalid module processing.nwb.components.position.time.invalid.fl_pos_invalid_time module processing.nwb.components.position.time.valid module processing.nwb.components.position.time.valid.fl_pos_valid_time module processing.nwb.components.processing_module module processing.nwb.components.sample_count_timestamp_corespondence module processing.nwb.components.sample_count_timestamp_corespondence.sample_count_timestamp_corespondence_injector module processing.nwb.components.task module processing.nwb.components.task.fl_task module processing.nwb.components.task.task_builder module processing.nwb.components.video_files module processing.nwb.components.video_files.camera_sample_frame_counts module processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts module processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts_injector module processing.nwb.components.video_files.video_files_copy_maker module processing.time module processing.tools module processing.tools.abstract_file_downloader module processing.tools.beartype module processing.tools.beartype.beartype module processing.tools.count_electrodes_in_ntrode module processing.tools.count_electrodes_in_probe module processing.tools.dataset module processing.tools.file_downloader module processing.tools.file_sorter module processing.tools.filter_probe_by_type module processing.tools.get_times_period_multiplier module processing.tools.validate_parameters module processing.validation module processing.validation.associated_files_validation module processing.validation.associated_files_validation_summary module processing.validation.metadata_section_validator module processing.validation.metadata_validation_summary module processing.validation.metadata_validator module processing.validation.not_empty_validation_summary module processing.validation.not_empty_validator module processing.validation.ntrode_validation_summary module processing.validation.path_validation_summary module processing.validation.path_validator module processing.validation.preprocessing_validation_summary module processing.validation.preprocessing_validator module processing.validation.task_validation_summary module processing.validation.task_validator module processing.validation.validation_registrator module processing.validation.validation_summary module processing.validation.validator module processing.validation.xml_files_validation module processing.validation.xml_files_validation_summary module ProcessingModuleCreator (class in rec_to_nwb.processing.nwb.components.processing_module.processing_module_creator) ProcessingModuleOriginator (class in rec_to_nwb.processing.builder.originators.processing_module_originator)

R

RawToNWBBuilder (class in rec_to_nwb.processing.builder.raw_to_nwb_builder) read() (FlAssociatedFilesReader static method), [1] read_data() (DataManager method) (MdaDataManager method) (PosDataManager method) read_timestamps_ids() (TimestampManager method) read_xml_from_rec_file() (XMLExtractor method), [1] read_xml_from_xml_file() (XMLExtractor method), [1] rec_path (XMLExtractor attribute) rec_to_nwb.processing module rec_to_nwb.processing.builder module rec_to_nwb.processing.builder.nwb_file_builder module rec_to_nwb.processing.builder.originators module rec_to_nwb.processing.builder.originators.analog_originator module rec_to_nwb.processing.builder.originators.associated_files_originator module rec_to_nwb.processing.builder.originators.camera_device_originator module rec_to_nwb.processing.builder.originators.camera_sample_frame_counts_originator module rec_to_nwb.processing.builder.originators.data_acq_device_originator module rec_to_nwb.processing.builder.originators.dio_originator module rec_to_nwb.processing.builder.originators.electrode_group_originator module rec_to_nwb.processing.builder.originators.electrodes_extension_originator module rec_to_nwb.processing.builder.originators.electrodes_originator module rec_to_nwb.processing.builder.originators.epochs_originator module rec_to_nwb.processing.builder.originators.header_device_originator module rec_to_nwb.processing.builder.originators.mda_invalid_time_originator module rec_to_nwb.processing.builder.originators.mda_originator module rec_to_nwb.processing.builder.originators.mda_valid_time_originator module rec_to_nwb.processing.builder.originators.pos_invalid_originator module rec_to_nwb.processing.builder.originators.pos_valid_time_originator module rec_to_nwb.processing.builder.originators.position_originator module rec_to_nwb.processing.builder.originators.probe_originator module rec_to_nwb.processing.builder.originators.processing_module_originator module rec_to_nwb.processing.builder.originators.sample_count_timestamp_corespondence_originator module rec_to_nwb.processing.builder.originators.shanks_electrodes_originator module rec_to_nwb.processing.builder.originators.shanks_originator module rec_to_nwb.processing.builder.originators.task_originator module rec_to_nwb.processing.builder.originators.video_files_originator module rec_to_nwb.processing.builder.raw_to_nwb_builder module rec_to_nwb.processing.exceptions module rec_to_nwb.processing.exceptions.corrupted_data_exception module rec_to_nwb.processing.exceptions.invalid_exception module rec_to_nwb.processing.exceptions.invalid_header_exception module rec_to_nwb.processing.exceptions.invalid_input_exception module rec_to_nwb.processing.exceptions.invalid_metadata_exception module rec_to_nwb.processing.exceptions.invalid_path_exception module rec_to_nwb.processing.exceptions.invalid_xml_exception module rec_to_nwb.processing.exceptions.missing_data_exception module rec_to_nwb.processing.exceptions.none_param_exception module rec_to_nwb.processing.exceptions.not_compatible_metadata module rec_to_nwb.processing.exceptions.not_equal_param_length_exception module rec_to_nwb.processing.header module rec_to_nwb.processing.header.header_checker module rec_to_nwb.processing.header.header_checker.header_comparator module rec_to_nwb.processing.header.header_checker.header_extractor module rec_to_nwb.processing.header.header_checker.header_logger module rec_to_nwb.processing.header.header_checker.header_processor module rec_to_nwb.processing.header.header_checker.rec_file_finder module rec_to_nwb.processing.header.module module rec_to_nwb.processing.header.module.argument module rec_to_nwb.processing.header.module.aux_display_configuration module rec_to_nwb.processing.header.module.channel module rec_to_nwb.processing.header.module.configuration module rec_to_nwb.processing.header.module.device module rec_to_nwb.processing.header.module.disp_channel module rec_to_nwb.processing.header.module.global_configuration module rec_to_nwb.processing.header.module.hardware_configuration module rec_to_nwb.processing.header.module.header module rec_to_nwb.processing.header.module.module_configuration module rec_to_nwb.processing.header.module.single_module_configuration module rec_to_nwb.processing.header.module.spike_channel module rec_to_nwb.processing.header.module.spike_configuration module rec_to_nwb.processing.header.module.spike_n_trode module rec_to_nwb.processing.header.module.stream_display module rec_to_nwb.processing.header.reconfig_header_checker module rec_to_nwb.processing.header.xml_extractor module rec_to_nwb.processing.metadata module rec_to_nwb.processing.metadata.corrupted_data_manager module rec_to_nwb.processing.metadata.metadata_extractor module rec_to_nwb.processing.metadata.metadata_manager module rec_to_nwb.processing.nwb module rec_to_nwb.processing.nwb.common module rec_to_nwb.processing.nwb.common.data_manager module rec_to_nwb.processing.nwb.common.session_time_extractor module rec_to_nwb.processing.nwb.common.timestamps_manager module rec_to_nwb.processing.nwb.components module rec_to_nwb.processing.nwb.components.analog module rec_to_nwb.processing.nwb.components.analog.analog_creator module rec_to_nwb.processing.nwb.components.analog.analog_files module rec_to_nwb.processing.nwb.components.analog.analog_injector module rec_to_nwb.processing.nwb.components.analog.fl_analog module rec_to_nwb.processing.nwb.components.analog.fl_analog_builder module rec_to_nwb.processing.nwb.components.analog.fl_analog_extractor module rec_to_nwb.processing.nwb.components.analog.fl_analog_manager module rec_to_nwb.processing.nwb.components.associated_files module rec_to_nwb.processing.nwb.components.associated_files.associated_files_creator module rec_to_nwb.processing.nwb.components.associated_files.associated_files_injector module rec_to_nwb.processing.nwb.components.associated_files.fl_associated_file module rec_to_nwb.processing.nwb.components.associated_files.fl_associated_files_builder module rec_to_nwb.processing.nwb.components.associated_files.fl_associated_files_manager module rec_to_nwb.processing.nwb.components.associated_files.fl_associated_files_reader module rec_to_nwb.processing.nwb.components.device module rec_to_nwb.processing.nwb.components.device.acq module rec_to_nwb.processing.nwb.components.device.acq.fl_data_acq_device module rec_to_nwb.processing.nwb.components.device.acq.fl_data_acq_device_builder module rec_to_nwb.processing.nwb.components.device.acq.fl_data_acq_device_manager module rec_to_nwb.processing.nwb.components.device.camera module rec_to_nwb.processing.nwb.components.device.camera.fl_camera_device module rec_to_nwb.processing.nwb.components.device.camera.fl_camera_device_builder module rec_to_nwb.processing.nwb.components.device.camera.fl_camera_device_manager module rec_to_nwb.processing.nwb.components.device.device_factory module rec_to_nwb.processing.nwb.components.device.device_injector module rec_to_nwb.processing.nwb.components.device.fl_device module rec_to_nwb.processing.nwb.components.device.header module rec_to_nwb.processing.nwb.components.device.header.fl_header_device module rec_to_nwb.processing.nwb.components.device.header.fl_header_device_builder module rec_to_nwb.processing.nwb.components.device.header.fl_header_device_manager module rec_to_nwb.processing.nwb.components.device.probe module rec_to_nwb.processing.nwb.components.device.probe.fl_probe module rec_to_nwb.processing.nwb.components.device.probe.fl_probe_builder module rec_to_nwb.processing.nwb.components.device.probe.fl_probe_extractor module rec_to_nwb.processing.nwb.components.device.probe.fl_probe_manager module rec_to_nwb.processing.nwb.components.device.probe.shanks module rec_to_nwb.processing.nwb.components.device.probe.shanks.fl_shank module rec_to_nwb.processing.nwb.components.device.probe.shanks.fl_shank_builder module rec_to_nwb.processing.nwb.components.device.probe.shanks.fl_shank_manager module rec_to_nwb.processing.nwb.components.device.probe.shanks.shank_creator module rec_to_nwb.processing.nwb.components.device.probe.shanks_electrodes module rec_to_nwb.processing.nwb.components.device.probe.shanks_electrodes.fl_shanks_electrode module rec_to_nwb.processing.nwb.components.device.probe.shanks_electrodes.fl_shanks_electrode_builder module rec_to_nwb.processing.nwb.components.device.probe.shanks_electrodes.fl_shanks_electrode_manager module rec_to_nwb.processing.nwb.components.device.probe.shanks_electrodes.shanks_electrode_creator module rec_to_nwb.processing.nwb.components.dio module rec_to_nwb.processing.nwb.components.dio.dio_builder module rec_to_nwb.processing.nwb.components.dio.dio_extractor module rec_to_nwb.processing.nwb.components.dio.dio_files module rec_to_nwb.processing.nwb.components.dio.dio_injector module rec_to_nwb.processing.nwb.components.dio.dio_manager module rec_to_nwb.processing.nwb.components.electrode_group module rec_to_nwb.processing.nwb.components.electrode_group.electrode_group_factory module rec_to_nwb.processing.nwb.components.electrode_group.electrode_group_injector module rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group module rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group_builder module rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group_manager module

rec_to_nwb.processing.nwb.components.electrode_group.fl_nwb_electrode_group module rec_to_nwb.processing.nwb.components.electrode_group.fl_nwb_electrode_group_builder module rec_to_nwb.processing.nwb.components.electrode_group.fl_nwb_electrode_group_manager module rec_to_nwb.processing.nwb.components.electrodes module rec_to_nwb.processing.nwb.components.electrodes.electrode_creator module rec_to_nwb.processing.nwb.components.electrodes.extension module rec_to_nwb.processing.nwb.components.electrodes.extension.electrode_extension_injector module rec_to_nwb.processing.nwb.components.electrodes.extension.fl_electrode_extension module rec_to_nwb.processing.nwb.components.electrodes.extension.fl_electrode_extension_builder module rec_to_nwb.processing.nwb.components.electrodes.extension.fl_electrode_extension_factory module rec_to_nwb.processing.nwb.components.electrodes.extension.fl_electrode_extension_manager module rec_to_nwb.processing.nwb.components.electrodes.fl_electrode_builder module rec_to_nwb.processing.nwb.components.electrodes.fl_electrode_manager module rec_to_nwb.processing.nwb.components.electrodes.fl_electrodes module rec_to_nwb.processing.nwb.components.epochs module rec_to_nwb.processing.nwb.components.epochs.epochs_injector module rec_to_nwb.processing.nwb.components.epochs.epochs_tag_extractor module rec_to_nwb.processing.nwb.components.epochs.fl_epochs module rec_to_nwb.processing.nwb.components.epochs.fl_epochs_builder module rec_to_nwb.processing.nwb.components.epochs.fl_epochs_extractor module rec_to_nwb.processing.nwb.components.epochs.fl_epochs_manager module rec_to_nwb.processing.nwb.components.iterator module rec_to_nwb.processing.nwb.components.iterator.data_iterator module rec_to_nwb.processing.nwb.components.iterator.multi_thread_data_iterator module rec_to_nwb.processing.nwb.components.iterator.multi_thread_timestamp_iterator module rec_to_nwb.processing.nwb.components.iterator.single_thread_data_iterator module rec_to_nwb.processing.nwb.components.iterator.single_thread_timestamp_iterator module rec_to_nwb.processing.nwb.components.iterator.timestamp_iterator module rec_to_nwb.processing.nwb.components.mda module rec_to_nwb.processing.nwb.components.mda.electrical_series_creator module rec_to_nwb.processing.nwb.components.mda.fl_mda module rec_to_nwb.processing.nwb.components.mda.fl_mda_builder module rec_to_nwb.processing.nwb.components.mda.fl_mda_extractor module rec_to_nwb.processing.nwb.components.mda.fl_mda_manager module rec_to_nwb.processing.nwb.components.mda.mda_content module rec_to_nwb.processing.nwb.components.mda.mda_data_manager module rec_to_nwb.processing.nwb.components.mda.mda_injector module rec_to_nwb.processing.nwb.components.mda.mda_timestamp_manager module rec_to_nwb.processing.nwb.components.mda.table_region_builder module rec_to_nwb.processing.nwb.components.mda.time module rec_to_nwb.processing.nwb.components.mda.time.invalid module rec_to_nwb.processing.nwb.components.mda.time.invalid.fl_mda_invalid_time module rec_to_nwb.processing.nwb.components.mda.time.invalid.fl_mda_invalid_time_builder module rec_to_nwb.processing.nwb.components.mda.time.invalid.fl_mda_invalid_time_manager module rec_to_nwb.processing.nwb.components.mda.time.invalid.mda_invalid_time_injector module rec_to_nwb.processing.nwb.components.mda.time.valid module rec_to_nwb.processing.nwb.components.mda.time.valid.fl_mda_valid_time module rec_to_nwb.processing.nwb.components.mda.time.valid.fl_mda_valid_time_builder module rec_to_nwb.processing.nwb.components.mda.time.valid.fl_mda_valid_time_manager module rec_to_nwb.processing.nwb.components.mda.time.valid.mda_valid_time_injector module rec_to_nwb.processing.nwb.components.position module rec_to_nwb.processing.nwb.components.position.fl_position module rec_to_nwb.processing.nwb.components.position.fl_position_builder module rec_to_nwb.processing.nwb.components.position.fl_position_extractor module rec_to_nwb.processing.nwb.components.position.fl_position_manager module rec_to_nwb.processing.nwb.components.position.pos_data_manager module rec_to_nwb.processing.nwb.components.position.pos_timestamp_manager module rec_to_nwb.processing.nwb.components.position.position_creator module rec_to_nwb.processing.nwb.components.position.time module rec_to_nwb.processing.nwb.components.position.time.invalid module rec_to_nwb.processing.nwb.components.position.time.invalid.fl_pos_invalid_time module rec_to_nwb.processing.nwb.components.position.time.invalid.fl_pos_invalid_time_builder module rec_to_nwb.processing.nwb.components.position.time.invalid.fl_pos_invalid_time_manager module rec_to_nwb.processing.nwb.components.position.time.invalid.pos_invalid_time_injector module rec_to_nwb.processing.nwb.components.position.time.valid module rec_to_nwb.processing.nwb.components.position.time.valid.fl_pos_valid_time module rec_to_nwb.processing.nwb.components.position.time.valid.fl_pos_valid_time_builder module rec_to_nwb.processing.nwb.components.position.time.valid.fl_pos_valid_time_manager module rec_to_nwb.processing.nwb.components.position.time.valid.pos_valid_time_injector module rec_to_nwb.processing.nwb.components.processing_module module rec_to_nwb.processing.nwb.components.processing_module.processing_module_creator module rec_to_nwb.processing.nwb.components.sample_count_timestamp_corespondence module rec_to_nwb.processing.nwb.components.sample_count_timestamp_corespondence.sample_count_timestamp_corespondence_builder module rec_to_nwb.processing.nwb.components.sample_count_timestamp_corespondence.sample_count_timestamp_corespondence_extractor module rec_to_nwb.processing.nwb.components.sample_count_timestamp_corespondence.sample_count_timestamp_corespondence_injector module rec_to_nwb.processing.nwb.components.sample_count_timestamp_corespondence.sample_count_timestamp_corespondence_manager module rec_to_nwb.processing.nwb.components.task module rec_to_nwb.processing.nwb.components.task.fl_task module rec_to_nwb.processing.nwb.components.task.task_builder module rec_to_nwb.processing.nwb.components.task.task_creator module rec_to_nwb.processing.nwb.components.task.task_manager module rec_to_nwb.processing.nwb.components.video_files module rec_to_nwb.processing.nwb.components.video_files.camera_sample_frame_counts module rec_to_nwb.processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts module rec_to_nwb.processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts_builder module rec_to_nwb.processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts_extractor module rec_to_nwb.processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts_injector module rec_to_nwb.processing.nwb.components.video_files.camera_sample_frame_counts.camera_sample_frame_counts_manager module rec_to_nwb.processing.nwb.components.video_files.fl_video_file module rec_to_nwb.processing.nwb.components.video_files.fl_video_files_builder module rec_to_nwb.processing.nwb.components.video_files.fl_video_files_extractor module rec_to_nwb.processing.nwb.components.video_files.fl_video_files_manager module rec_to_nwb.processing.nwb.components.video_files.video_files_copy_maker module rec_to_nwb.processing.nwb.components.video_files.video_files_creator module rec_to_nwb.processing.nwb.components.video_files.video_files_injector module rec_to_nwb.processing.time module rec_to_nwb.processing.time.continuous_time_extractor module rec_to_nwb.processing.time.timestamp_converter module rec_to_nwb.processing.tools module rec_to_nwb.processing.tools.abstract_file_downloader module rec_to_nwb.processing.tools.beartype module rec_to_nwb.processing.tools.beartype.beartype module rec_to_nwb.processing.tools.count_electrodes_in_ntrode module rec_to_nwb.processing.tools.count_electrodes_in_probe module rec_to_nwb.processing.tools.data_scanner module rec_to_nwb.processing.tools.dataset module rec_to_nwb.processing.tools.file_downloader module rec_to_nwb.processing.tools.file_sorter module rec_to_nwb.processing.tools.filter_probe_by_type module rec_to_nwb.processing.tools.get_times_period_multiplier module rec_to_nwb.processing.tools.validate_parameters module rec_to_nwb.processing.validation module rec_to_nwb.processing.validation.associated_files_validation module rec_to_nwb.processing.validation.associated_files_validation_summary module rec_to_nwb.processing.validation.metadata_section_validator module rec_to_nwb.processing.validation.metadata_validation_summary module rec_to_nwb.processing.validation.metadata_validator module rec_to_nwb.processing.validation.not_empty_validation_summary module rec_to_nwb.processing.validation.not_empty_validator module rec_to_nwb.processing.validation.ntrode_validation_summary module rec_to_nwb.processing.validation.ntrode_validator module rec_to_nwb.processing.validation.path_validation_summary module rec_to_nwb.processing.validation.path_validator module rec_to_nwb.processing.validation.preprocessing_validation_summary module rec_to_nwb.processing.validation.preprocessing_validator module rec_to_nwb.processing.validation.task_validation_summary module rec_to_nwb.processing.validation.task_validator module rec_to_nwb.processing.validation.validation_registrator module rec_to_nwb.processing.validation.validation_summary module rec_to_nwb.processing.validation.validator module rec_to_nwb.processing.validation.xml_files_validation module rec_to_nwb.processing.validation.xml_files_validation_summary module RecFileFinder (class in processing.header.header_checker.rec_file_finder) (class in rec_to_nwb.processing.header.header_checker.rec_file_finder) recommended_chunk_shape() (DataIterator method) (TimestampIterator method) recommended_data_shape() (DataIterator method) (TimestampIterator method) ReconfigHeaderChecker (class in rec_to_nwb.processing.header.reconfig_header_checker) register() (ValidationRegistrator method), [1] retrieve_real_timestamps() (TimestampManager method) return_validated_period() (in module processing.tools.get_times_period_multiplier) (in module rec_to_nwb.processing.tools.get_times_period_multiplier)

S

SampleCountTimestampCorespondenceBuilder (class in rec_to_nwb.processing.nwb.components.sample_count_timestamp_corespondence.sample_count_timestamp_corespondence_builder) SampleCountTimestampCorespondenceExtractor (class in rec_to_nwb.processing.nwb.components.sample_count_timestamp_corespondence.sample_count_timestamp_corespondence_extractor) SampleCountTimestampCorespondenceInjector (class in processing.nwb.components.sample_count_timestamp_corespondence.sample_count_timestamp_corespondence_injector) (class in rec_to_nwb.processing.nwb.components.sample_count_timestamp_corespondence.sample_count_timestamp_corespondence_injector) SampleCountTimestampCorespondenceManager (class in rec_to_nwb.processing.nwb.components.sample_count_timestamp_corespondence.sample_count_timestamp_corespondence_manager) SampleCountTimestampCorespondenceOriginator (class in rec_to_nwb.processing.builder.originators.sample_count_timestamp_corespondence_originator) SessionTimeExtractor (class in rec_to_nwb.processing.nwb.common.session_time_extractor) set_rec_path() (XMLExtractor method), [1] set_xml_path() (XMLExtractor method), [1] ShankCreator (class in rec_to_nwb.processing.nwb.components.device.probe.shanks.shank_creator) ShanksElectrodeCreator (class in rec_to_nwb.processing.nwb.components.device.probe.shanks_electrodes.shanks_electrode_creator) ShanksElectrodeOriginator (class in rec_to_nwb.processing.builder.originators.shanks_electrodes_originator) ShanksOriginator (class in rec_to_nwb.processing.builder.originators.shanks_originator) SingleModuleConfiguration (class in processing.header.module.single_module_configuration) (class in rec_to_nwb.processing.header.module.single_module_configuration)

SingleThreadDataIterator (class in rec_to_nwb.processing.nwb.components.iterator.single_thread_data_iterator) SingleThreadTimestampIterator (class in rec_to_nwb.processing.nwb.components.iterator.single_thread_timestamp_iterator) sort_filenames() (FileSorter static method), [1] SpikeChannel (class in processing.header.module.spike_channel) (class in rec_to_nwb.processing.header.module.spike_channel) SpikeConfiguration (class in processing.header.module.spike_configuration) (class in rec_to_nwb.processing.header.module.spike_configuration) SpikeNTrode (class in processing.header.module.spike_n_trode) (class in rec_to_nwb.processing.header.module.spike_n_trode) start_downloading() (AbstractFileDownloader method), [1] (FileDownloader method), [1], [2], [3] StreamDisplay (class in processing.header.module.stream_display) (class in rec_to_nwb.processing.header.module.stream_display)

T

TableRegionBuilder (class in processing.nwb.components.mda.table_region_builder) (class in rec_to_nwb.processing.nwb.components.mda.table_region_builder) TaskBuilder (class in processing.nwb.components.task.task_builder) (class in rec_to_nwb.processing.nwb.components.task.task_builder) TaskCreator (class in rec_to_nwb.processing.nwb.components.task.task_creator) TaskManager (class in rec_to_nwb.processing.nwb.components.task.task_manager) TaskOriginator (class in rec_to_nwb.processing.builder.originators.task_originator)

TaskValidationSummary (class in processing.validation.task_validation_summary) (class in rec_to_nwb.processing.validation.task_validation_summary) TaskValidator (class in processing.validation.task_validator) (class in rec_to_nwb.processing.validation.task_validator) TimestampConverter (class in rec_to_nwb.processing.time.timestamp_converter) TimestampIterator (class in rec_to_nwb.processing.nwb.components.iterator.timestamp_iterator) TimestampManager (class in rec_to_nwb.processing.nwb.common.timestamps_manager)

V

validate() (ReconfigHeaderChecker class method) (ValidationRegistrator method), [1] validate_ntrode_metadata_with_probe_metadata() (NTrodeValidator static method) validate_parameters_equal_length() (in module processing.tools.validate_parameters) (in module rec_to_nwb.processing.tools.validate_parameters) validate_parameters_not_none() (in module processing.tools.validate_parameters) (in module rec_to_nwb.processing.tools.validate_parameters) validate_sections() (MetadataSectionValidator method), [1] ValidationRegistrator (class in processing.validation.validation_registrator) (class in rec_to_nwb.processing.validation.validation_registrator)

ValidationSummary (class in processing.validation.validation_summary) (class in rec_to_nwb.processing.validation.validation_summary) Validator (class in processing.validation.validator) (class in rec_to_nwb.processing.validation.validator) VideoFilesCopyMaker (class in processing.nwb.components.video_files.video_files_copy_maker) (class in rec_to_nwb.processing.nwb.components.video_files.video_files_copy_maker) VideoFilesCreator (class in rec_to_nwb.processing.nwb.components.video_files.video_files_creator) VideoFilesInjector (class in rec_to_nwb.processing.nwb.components.video_files.video_files_injector) VideoFilesOriginator (class in rec_to_nwb.processing.builder.originators.video_files_originator)

W

write() (NWBFileBuilder method), [1]

X

xml_path (XMLExtractor attribute) XMLExtractor (class in rec_to_nwb.processing.header.xml_extractor) XmlFilesValidationSummary (class in processing.validation.xml_files_validation_summary) (class in rec_to_nwb.processing.validation.xml_files_validation_summary)

XmlFilesValidator (class in processing.validation.xml_files_validation) (class in rec_to_nwb.processing.validation.xml_files_validation) xsd_path (XMLExtractor attribute)